Horizontal gene transfer is an important contributor to evolution. Accor...
The class of Galled-Tree Explainable (GaTEx) graphs has just recently be...
Most genes are part of larger families of evolutionary related genes. Th...
Median graphs are connected graphs in which for all three vertices there...
Evolutionary scenarios describing the evolution of a family of genes wit...
The modular decomposition of a graph G is a natural construction to capt...
Rooted acyclic graphs appear naturally when the phylogenetic relationshi...
We characterize graphs G that can be explained by rooted labeled level-1...
Horizontal gene transfer events partition a gene tree T and thus, its le...
Median graphs are connected graphs in which for all three vertices there...
A k-matching M of a graph G=(V,E) is a subset M⊆ E such that
each connec...
While atom tracking with isotope-labeled compounds is an essential and
s...
A rooted tree T with vertex labels t(v) and set-valued edge labels
λ(e) ...
Background. The supertree problem, i.e., the task of finding a common
re...
The question whether a partition 𝒫 and a hierarchy ℋ
or a tree-like spli...
The modular decomposition of a symmetric map δ X× X →Υ (or, equivalently...
Best match graphs (BMGs) are vertex-colored digraphs that naturally aris...
Best match graphs (BMGs) are a class of colored digraphs that naturally
...
2-colored best match graphs (2-BMGs) form a subclass of sink-free
bi-tra...
Several implicit methods to infer Horizontal Gene Transfer (HGT) focus o...
Best match graphs (BMG) are a key intermediate in graph-based orthology
...
Best match graphs (BMGs) are vertex-colored directed graphs that were
in...
Genome-scale orthology assignments are usually based on reciprocal best
...
We introduce the concept of complete edge-colored permutation graphs as
...
Cographs are exactly the hereditarily well-colored graphs, i.e., the gra...
Binary relations derived from labeled rooted trees play an import role i...
Fitch graphs G=(X,E) are digraphs that are explained by {∅,
1}-edge-labe...
Fitch graphs G=(X,E) are digraphs that are explained by {∅,
1}-edge-labe...
Graph transformation approaches have been successfully used to analyse a...
The history of gene families – which are equivalent to event-labeled gen...
Reciprocal best match graphs (RBMGs) are vertex colored graphs whose ver...
A wide variety of problems in computational biology, most notably the
as...
Fitch graphs G=(X,E) are di-graphs that are explained by
{⊗,1}-edge-labe...
Phylogenomics heavily relies on well-curated sequence data sets that con...
The symmetric version of Fitch's xenology relation coincides with class ...
Two genes are xenologs in the sense of Fitch if they are separated by at...
A variety of methods based on sequence similarity, reconciliation, synte...