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01/07/2021
The Geometry of the space of Discrete Coalescent Trees
Computational inference of dated evolutionary histories relies upon vari...
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03/07/2020
A 1000-fold Acceleration of Hidden Markov Model Fitting using Graphical Processing Units, with application to Nonvolcanic Tremor Classification
Hidden Markov models (HMMs) are general purpose models for time-series d...
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09/16/2019
Bayesian inference of species trees using diffusion models
We describe a new and computationally efficient Bayesian methodology for...
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11/01/2018
An O(n n) time Algorithm for computing the Path-length Distance between Trees
Tree comparison metrics have proven to be an invaluable aide in the reco...
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09/18/2018
Negative type diversities, a multi-dimensional analogue of negative type metrics
Diversities are a generalization of metric spaces in which a non-negativ...
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03/21/2018
Adaptive Sequential MCMC for Combined State and Parameter Estimation
In the case of a linear state space model, we implement an MCMC sampler ...
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03/20/2018
V-Splines and Bayes Estimate
Smoothing splines can be thought of as the posterior mean of a Gaussian ...
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03/19/2018