The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments

05/16/2019
by   Rafael S. Gonçalves, et al.
0

The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have developed–the CEDAR Workbench–is a suite of Web-based tools and REST APIs that allows users to construct metadata templates, to fill in templates to generate high-quality metadata, and to share and manage these resources. The CEDAR Workbench provides a versatile, REST-based environment for authoring metadata that are enriched with terms from ontologies. The metadata are available as JSON, JSON-LD, or RDF for easy integration in scientific applications and reusability on the Web. Users can leverage our APIs for validating and submitting metadata to external repositories. The CEDAR Workbench is freely available and open-source.

READ FULL TEXT
POST COMMENT

Comments

There are no comments yet.

Authors

page 5

03/19/2019

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

The metadata about scientific experiments published in online repositori...
03/30/2020

Making Metadata Fit for Next Generation Language Technology Platforms: The Metadata Schema of the European Language Grid

The current scientific and technological landscape is characterised by t...
09/17/2020

Building Containerized Environments for Reproducibility and Traceability of Scientific Workflows

Scientists rely on simulations to study natural phenomena. Trusting the ...
02/03/2021

Harvest – An Open Source Toolkit for Extracting Posts and Post Metadata from Web Forums

Automatic extraction of forum posts and metadata is a crucial but challe...
05/23/2017

Calidad en repositorios digitales en Argentina, estudio comparativo y cualitativo

Numerous institutions and organizations need not only to preserve the ma...
09/20/2018

Specimens as research objects: reconciliation across distributed repositories to enable metadata propagation

Botanical specimens are shared as long-term consultable research objects...
10/29/2020

How Many Pages? Paper Length Prediction from the Metadata

Being able to predict the length of a scientific paper may be helpful in...
This week in AI

Get the week's most popular data science and artificial intelligence research sent straight to your inbox every Saturday.