cito: An R package for training neural networks using torch
share
1. Deep neural networks (DNN) have become a central class of algorithms for regression and classification tasks. Although some packages exist that allow users to specify DNN in R, those are rather limited in their functionality. Most current deep learning applications therefore rely on one of the major deep learning frameworks, PyTorch or TensorFlow, to build and train DNN. However, using these frameworks requires substantially more training and time than comparable regression or machine learning packages in the R environment. 2. Here, we present cito, an user-friendly R package for deep learning. cito allows R users to specify deep neural networks in the familiar formula syntax used by most modeling functions in R. In the background, cito uses torch to fit the models, taking advantage of all the numerical optimizations of the torch library, including the ability to switch between training models on CPUs or GPUs. Moreover, cito includes many user-friendly functions for predictions and an explainable Artificial Intelligence (xAI) pipeline for the fitted models. 3. We showcase a typical analysis pipeline using cito, including its built-in xAI features to explore the trained DNN, by building a species distribution model of the African elephant. 4. In conclusion, cito provides a user-friendly R framework to specify, deploy and interpret deep neural networks based on torch. The current stable CRAN version mainly supports fully connected DNNs, but it is planned that future versions will also include CNNs and RNNs.
READ FULL TEXT