A Model-free Approach for Testing Association

10/13/2020
by   Saptarshi Chatterjee, et al.
0

The question of association between outcome and feature is generally framed in the context of a model on functional and distributional forms. Our motivating application is that of identifying serum biomarkers of angiogenesis, energy metabolism, apoptosis, and inflammation, predictive of recurrence after lung resection in node-negative non-small cell lung cancer patients with tumor stage T2a or less. We propose an omnibus approach for testing association that is free of assumptions on functional forms and distributions and can be used as a black box method. This proposed maximal permutation test is based on the idea of thresholding, is readily implementable and is computationally efficient. We illustrate that the proposed omnibus tests maintain their levels and have strong power as black box tests for detecting linear, nonlinear and quantile-based associations, even with outlier-prone and heavy-tailed error distributions and under nonparametric setting. We additionally illustrate the use of this approach in model-free feature screening and further examine the level and power of these tests for binary outcome. We compare the performance of the proposed omnibus tests with comparator methods in our motivating application to identify preoperative serum biomarkers associated with non-small cell lung cancer recurrence in early stage patients.

READ FULL TEXT

page 1

page 2

page 3

page 4

research
11/17/2022

Machine Learning-Assisted Recurrence Prediction for Early-Stage Non-Small-Cell Lung Cancer Patients

Background: Stratifying cancer patients according to risk of relapse can...
research
06/30/2023

A general two-stage progressive model of cancer natural history to project downstaging due to multi-cancer screening tests

Multi-cancer early detection (MCED) tests offer to screen for multiple t...
research
04/05/2020

Stage I non-small cell lung cancer stratification by using a model-based clustering algorithm with covariates

Lung cancer is currently the leading cause of cancer deaths. Among vario...
research
03/18/2022

Imaging-based histological features are predictive of MET alterations in Non-Small Cell Lung Cancer

MET is a proto-oncogene whose somatic activation in non-small cell lung ...
research
06/11/2019

Distribution-Free Multisample Test Based on Optimal Matching with Applications to Single Cell Genomics

In this paper we propose a nonparametric graphical test based on optimal...
research
01/27/2019

The Robust Kernel Association Test

Testing the association between SNP effects and a response is a common t...
research
09/15/2023

CAT: a conditional association test for microbiome data using a leave-out approach

In microbiome analysis, researchers often seek to identify taxonomic fea...

Please sign up or login with your details

Forgot password? Click here to reset