Hiroshi Ishikawa

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  • Inference of visual field test performance from OCT volumes using deep learning

    Visual field tests (VFT) are pivotal for glaucoma diagnosis and conducted regularly to monitor disease progression. Here we address the question to what degree aggregate VFT measurements such as Visual Field Index (VFI) and Mean Deviation (MD) can be inferred from Optical Coherence Tomography (OCT) scans of the Optic Nerve Head (ONH) or the macula. Accurate inference of VFT measurements from OCT could reduce examination time and cost. We propose a novel 3D Convolutional Neural Network (CNN) for this task and compare its accuracy with classical machine learning (ML) algorithms trained on common, segmentation-based OCT, features employed for glaucoma diagnostics. Peak accuracies were achieved on ONH scans when inferring VFI with a Pearson Correlation (PC) of 0.88±0.035 for the CNN and a significantly lower (p < 0.01) PC of 0.74±0.090 for the best performing, classical ML algorithm -- a Random Forest regressor. Estimation of MD was equally accurate with a PC of 0.88±0.023 on ONH scans for the CNN.

    08/05/2019 ∙ by Stefan Maetschke, et al. ∙ 4 share

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  • Mastering Sketching: Adversarial Augmentation for Structured Prediction

    We present an integral framework for training sketch simplification networks that convert challenging rough sketches into clean line drawings. Our approach augments a simplification network with a discriminator network, training both networks jointly so that the discriminator network discerns whether a line drawing is a real training data or the output of the simplification network, which in turn tries to fool it. This approach has two major advantages. First, because the discriminator network learns the structure in line drawings, it encourages the output sketches of the simplification network to be more similar in appearance to the training sketches. Second, we can also train the simplification network with additional unsupervised data, using the discriminator network as a substitute teacher. Thus, by adding only rough sketches without simplified line drawings, or only line drawings without the original rough sketches, we can improve the quality of the sketch simplification. We show how our framework can be used to train models that significantly outperform the state of the art in the sketch simplification task, despite using the same architecture for inference. We additionally present an approach to optimize for a single image, which improves accuracy at the cost of additional computation time. Finally, we show that, using the same framework, it is possible to train the network to perform the inverse problem, i.e., convert simple line sketches into pencil drawings, which is not possible using the standard mean squared error loss. We validate our framework with two user tests, where our approach is preferred to the state of the art in sketch simplification 92.3 5.

    03/27/2017 ∙ by Edgar Simo-Serra, et al. ∙ 0 share

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  • Representation and Measure of Structural Information

    We introduce a uniform representation of general objects that captures the regularities with respect to their structure. It allows a representation of a general class of objects including geometric patterns and images in a sparse, modular, hierarchical, and recursive manner. The representation can exploit any computable regularity in objects to compactly describe them, while also being capable of representing random objects as raw data. A set of rules uniformly dictates the interpretation of the representation into raw signal, which makes it possible to ask what pattern a given raw signal contains. Also, it allows simple separation of the information that we wish to ignore from that which we measure, by using a set of maps to delineate the a priori parts of the objects, leaving only the information in the structure. Using the representation, we introduce a measure of information in general objects relative to structures defined by the set of maps. We point out that the common prescription of encoding objects by strings to use Kolmogorov complexity is meaningless when, as often is the case, the encoding is not specified in any way other than that it exists. Noting this, we define the measure directly in terms of the structures of the spaces in which the objects reside. As a result, the measure is defined relative to a set of maps that characterize the structures. It turns out that the measure is equivalent to Kolmogorov complexity when it is defined relative to the maps characterizing the structure of natural numbers. Thus, the formulation gives the larger class of objects a meaningful measure of information that generalizes Kolmogorov complexity.

    11/28/2007 ∙ by Hiroshi Ishikawa, et al. ∙ 0 share

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  • A feature agnostic approach for glaucoma detection in OCT volumes

    Optical coherence tomography (OCT) based measurements of retinal layer thickness, such as the retinal nerve fibre layer (RNFL) and the ganglion cell with inner plexiform layer (GCIPL) are commonly used for the diagnosis and monitoring of glaucoma. Previously, machine learning techniques have utilized segmentation-based imaging features such as the peripapillary RNFL thickness and the cup-to-disc ratio. Here, we propose a deep learning technique that classifies eyes as healthy or glaucomatous directly from raw, unsegmented OCT volumes of the optic nerve head (ONH) using a 3D Convolutional Neural Network (CNN). We compared the accuracy of this technique with various feature-based machine learning algorithms and demonstrated the superiority of the proposed deep learning based method. Logistic regression was found to be the best performing classical machine learning technique with an AUC of 0.89. In direct comparison, the deep learning approach achieved a substantially higher AUC of 0.94 with the additional advantage of providing insight into which regions of an OCT volume are important for glaucoma detection. Computing Class Activation Maps (CAM), we found that the CNN identified neuroretinal rim and optic disc cupping as well as the lamina cribrosa (LC) and its surrounding areas as the regions significantly associated with the glaucoma classification. These regions anatomically correspond to the well established and commonly used clinical markers for glaucoma diagnosis such as increased cup volume, cup diameter, and neuroretinal rim thinning at the superior and inferior segments.

    07/12/2018 ∙ by Stefan Maetschke, et al. ∙ 0 share

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