Self-Supervised Representation Learning using Visual Field Expansion on Digital Pathology

09/07/2021
by   Joseph Boyd, et al.
18

The examination of histopathology images is considered to be the gold standard for the diagnosis and stratification of cancer patients. A key challenge in the analysis of such images is their size, which can run into the gigapixels and can require tedious screening by clinicians. With the recent advances in computational medicine, automatic tools have been proposed to assist clinicians in their everyday practice. Such tools typically process these large images by slicing them into tiles that can then be encoded and utilized for different clinical models. In this study, we propose a novel generative framework that can learn powerful representations for such tiles by learning to plausibly expand their visual field. In particular, we developed a progressively grown generative model with the objective of visual field expansion. Thus trained, our model learns to generate different tissue types with fine details, while simultaneously learning powerful representations that can be used for different clinical endpoints, all in a self-supervised way. To evaluate the performance of our model, we conducted classification experiments on CAMELYON17 and CRC benchmark datasets, comparing favorably to other self-supervised and pre-trained strategies that are commonly used in digital pathology. Our code is available at https://github.com/jcboyd/cdpath21-gan.

READ FULL TEXT

page 5

page 6

page 7

research
10/16/2022

Sentence Representation Learning with Generative Objective rather than Contrastive Objective

Though offering amazing contextualized token-level representations, curr...
research
07/31/2023

Visual Geo-localization with Self-supervised Representation Learning

Visual Geo-localization (VG) has emerged as a significant research area,...
research
08/03/2021

Solo-learn: A Library of Self-supervised Methods for Visual Representation Learning

This paper presents solo-learn, a library of self-supervised methods for...
research
07/27/2023

vox2vec: A Framework for Self-supervised Contrastive Learning of Voxel-level Representations in Medical Images

This paper introduces vox2vec - a contrastive method for self-supervised...
research
07/28/2021

Fast and Scalable Image Search For Histology

The expanding adoption of digital pathology has enabled the curation of ...
research
04/26/2023

Do SSL Models Have Déjà Vu? A Case of Unintended Memorization in Self-supervised Learning

Self-supervised learning (SSL) algorithms can produce useful image repre...
research
08/09/2023

Deep Metric Learning for the Hemodynamics Inference with Electrocardiogram Signals

Heart failure is a debilitating condition that affects millions of peopl...

Please sign up or login with your details

Forgot password? Click here to reset