Ridge-penalized adaptive Mantel test and its application in imaging genetics

03/03/2021
by   Dustin Pluta, et al.
0

We propose a ridge-penalized adaptive Mantel test (AdaMant) for evaluating the association of two high-dimensional sets of features. By introducing a ridge penalty, AdaMant tests the association across many metrics simultaneously. We demonstrate how ridge penalization bridges Euclidean and Mahalanobis distances and their corresponding linear models from the perspective of association measurement and testing. This result is not only theoretically interesting but also has important implications in penalized hypothesis testing, especially in high dimensional settings such as imaging genetics. Applying the proposed method to an imaging genetic study of visual working memory in health adults, we identified interesting associations of brain connectivity (measured by EEG coherence) with selected genetic features.

READ FULL TEXT
research
12/20/2017

Adaptive Mantel Test for Penalized Inference, with Applications to Imaging Genetics

Mantel's test (MT) for association is conducted by testing the linear re...
research
03/31/2022

rfPhen2Gen: A machine learning based association study of brain imaging phenotypes to genotypes

Imaging genetic studies aim to find associations between genetic variant...
research
10/21/2019

Hypothesis Testing in High-Dimensional Instrumental Variables Regression with an Application to Genomics Data

Gene expression and phenotype association can be affected by potential u...
research
09/14/2015

Markov Boundary Discovery with Ridge Regularized Linear Models

Ridge regularized linear models (RRLMs), such as ridge regression and th...
research
06/01/2023

HiQR: An efficient algorithm for high dimensional quadratic regression with penalties

This paper investigates the efficient solution of penalized quadratic re...
research
11/27/2020

Broken Adaptive Ridge Regression for Right-Censored Survival Data

Broken adaptive ridge (BAR) is a computationally scalable surrogate to L...
research
11/05/2019

Penalized least squares and sign constraints with modified Newton-Raphson algorithms: application to EEG source imaging

We propose a modified Newton-Raphson (MNR) algorithm to estimate multipl...

Please sign up or login with your details

Forgot password? Click here to reset