Reachability Analysis for Lexicase Selection via Community Assembly Graphs

09/20/2023
by   Emily Dolson, et al.
0

Fitness landscapes have historically been a powerful tool for analyzing the search space explored by evolutionary algorithms. In particular, they facilitate understanding how easily reachable an optimal solution is from a given starting point. However, simple fitness landscapes are inappropriate for analyzing the search space seen by selection schemes like lexicase selection in which the outcome of selection depends heavily on the current contents of the population (i.e. selection schemes with complex ecological dynamics). Here, we propose borrowing a tool from ecology to solve this problem: community assembly graphs. We demonstrate a simple proof-of-concept for this approach on an NK Landscape where we have perfect information. We then demonstrate that this approach can be successfully applied to a complex genetic programming problem. While further research is necessary to understand how to best use this tool, we believe it will be a valuable addition to our toolkit and facilitate analyses that were previously impossible.

READ FULL TEXT
research
06/06/2023

Phylogeny-informed fitness estimation

Phylogenies (ancestry trees) depict the evolutionary history of an evolv...
research
04/29/2022

A suite of diagnostic metrics for characterizing selection schemes

Evolutionary algorithms are effective general-purpose techniques for sol...
research
01/13/2019

Machine-learning a virus assembly fitness landscape

Realistic evolutionary fitness landscapes are notoriously difficult to c...
research
07/03/2009

Spontaneous organization leads to robustness in evolutionary algorithms

The interaction networks of biological systems are known to take on seve...
research
05/28/2022

Biological Evolution and Genetic Algorithms: Exploring the Space of Abstract Tile Self-Assembly

A physically-motivated genetic algorithm (GA) and full enumeration for a...
research
09/16/2011

Roulette-wheel selection via stochastic acceptance

Roulette-wheel selection is a frequently used method in genetic and evol...

Please sign up or login with your details

Forgot password? Click here to reset