Quantum-chemical insights from interpretable atomistic neural networks

06/27/2018
by   Kristof T. Schütt, et al.
0

With the rise of deep neural networks for quantum chemistry applications, there is a pressing need for architectures that, beyond delivering accurate predictions of chemical properties, are readily interpretable by researchers. Here, we describe interpretation techniques for atomistic neural networks on the example of Behler-Parrinello networks as well as the end-to-end model SchNet. Both models obtain predictions of chemical properties by aggregating atom-wise contributions. These latent variables can serve as local explanations of a prediction and are obtained during training without additional cost. Due to their correspondence to well-known chemical concepts such as atomic energies and partial charges, these atom-wise explanations enable insights not only about the model but more importantly about the underlying quantum-chemical regularities. We generalize from atomistic explanations to 3d space, thus obtaining spatially resolved visualizations which further improve interpretability. Finally, we analyze learned embeddings of chemical elements that exhibit a partial ordering that resembles the order of the periodic table. As the examined neural networks show excellent agreement with chemical knowledge, the presented techniques open up new venues for data-driven research in chemistry, physics and materials science.

READ FULL TEXT

page 1

page 2

page 3

page 4

research
06/24/2019

Unifying machine learning and quantum chemistry -- a deep neural network for molecular wavefunctions

Machine learning advances chemistry and materials science by enabling la...
research
12/11/2018

Learning representations of molecules and materials with atomistic neural networks

Deep Learning has been shown to learn efficient representations for stru...
research
12/06/2017

SMILES2Vec: An Interpretable General-Purpose Deep Neural Network for Predicting Chemical Properties

Chemical databases store information in text representations, and the SM...
research
10/31/2018

Compressing physical properties of atomic species for improving predictive chemistry

The answers to many unsolved problems lie in the intractable chemical sp...
research
09/29/2022

polyBERT: A chemical language model to enable fully machine-driven ultrafast polymer informatics

Polymers are a vital part of everyday life. Their chemical universe is s...
research
09/13/2023

Deep Quantum Graph Dreaming: Deciphering Neural Network Insights into Quantum Experiments

Despite their promise to facilitate new scientific discoveries, the opaq...
research
02/16/2018

Algorithmic Complexity and Reprogrammability of Chemical Structure Networks

Here we address the challenge of profiling causal properties and trackin...

Please sign up or login with your details

Forgot password? Click here to reset