Prospects of tensor-based numerical modeling of the collective electrostatic potential in many-particle systems

01/30/2020
by   Venera Khoromskaia, et al.
0

Recently the rank-structured tensor approach suggested a progress in the numerical treatment of the long-range electrostatic potentials in many-particle systems and the respective interaction energy and forces [39,40,2]. In this paper, we outline the prospects for tensor-based numerical modeling of the collective electrostatic potential on lattices and in many-particle systems of general type. We generalize the approach initially introduced for the rank-structured grid-based calculation of the collective potentials on 3D lattices [39] to the case of many-particle systems with variable charges placed on L^⊗ d lattices and discretized on fine n^⊗ d Cartesian grids for arbitrary dimension d. As result, the interaction potential is represented in a parametric low-rank canonical format in O(d L n) complexity. The energy is then calculated in O(d L) operations. Electrostatics in large biomolecules is modeled by using the novel range-separated (RS) tensor format [2], which maintains the long-range part of the 3D collective potential of the many-body system represented on n× n × n grid in a parametric low-rank form in O(n)-complexity. We show that the force field can be easily recovered by using the already precomputed electric field in the low-rank RS format. The RS tensor representation of the discretized Dirac delta [45] enables the efficient energy preserving regularization scheme for solving the 3D elliptic PDEs with strongly singular right-hand side arising in bio-sciences. We conclude that the rank-structured tensor-based approximation techniques provide the promising numerical tools for applications to many-body dynamics, protein docking and classification problems and for low-parametric interpolation of scattered data in data science.

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