On the parameterized complexity of the Perfect Phylogeny problem
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This paper categorizes the parameterized complexity of the algorithmic problems Perfect Phylogeny and Triangulating Colored Graphs. We show that they are complete for the parameterized complexity class XALP using a reduction from Tree-chained Multicolor Independent Set and a proof of membership. We introduce the problem Triangulating Multicolored Graphs as a stepping stone and prove XALP-completeness for this problem as well. We also show that, assuming the Exponential Time Hypothesis, there exists no algorithm that solves any of these problems in time f(k) n^o(k), where n is the input size, k the parameter, and f any computable function.
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