Neuropathic Pain Diagnosis Simulator for Causal Discovery Algorithm Evaluation

06/04/2019 ∙ by Ruibo Tu, et al. ∙ 1

Discovery of causal relations from observational data is essential for many disciplines of science and real-world applications. However, unlike traditional machine learning algorithms, whose developments have been greatly fostered by a large amount of available benchmark datasets, causal discovery algorithms are notoriously difficult to be systematically evaluated due to the fact that few datasets with known ground-truth causal relations are available. In this work, we handle the problem of evaluating causal discovery algorithms by building a flexible simulator in the medical setting. We develop a neuropathic pain simulator, inspired by the fact that the biological processes of neuropathic pathophysiology are well studied with well-understood causal influences. Our simulator exploits the causal graph of the neuropathic pain pathology, and its parameters in the generator are estimated from real-life patient cases. We show that data generated from our simulator have the same statistics as real-world data. As a clear advantage, the simulator can produce infinite samples without jeopardizing the privacy of real-world patients. Our simulator provides a natural tool for evaluating various types of causal discovery algorithms, including those to deal with practical issues in causal discovery, such as unknown confounders, selection bias, and missing data. Using our simulator, we have evaluated extensively causal discovery algorithms under various settings.

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