Minimum energy path calculations with Gaussian process regression

03/30/2017
by   Olli-Pekka Koistinen, et al.
0

The calculation of minimum energy paths for transitions such as atomic and/or spin re-arrangements is an important task in many contexts and can often be used to determine the mechanism and rate of transitions. An important challenge is to reduce the computational effort in such calculations, especially when ab initio or electron density functional calculations are used to evaluate the energy since they can require large computational effort. Gaussian process regression is used here to reduce significantly the number of energy evaluations needed to find minimum energy paths of atomic rearrangements. By using results of previous calculations to construct an approximate energy surface and then converge to the minimum energy path on that surface in each Gaussian process iteration, the number of energy evaluations is reduced significantly as compared with regular nudged elastic band calculations. For a test problem involving rearrangements of a heptamer island on a crystal surface, the number of energy evaluations is reduced to less than a fifth. The scaling of the computational effort with the number of degrees of freedom as well as various possible further improvements to this approach are discussed.

READ FULL TEXT

page 8

page 10

research
06/14/2017

Nudged elastic band calculations accelerated with Gaussian process regression

Minimum energy paths for transitions such as atomic and/or spin rearrang...
research
05/11/2020

Multi-Fidelity Gaussian Process based Empirical Potential Development for Si:H Nanowires

In material modeling, the calculation speed using the empirical potentia...
research
04/15/2022

Convergence of the Discrete Minimum Energy Path

The minimum energy path (MEP) describes the mechanism of reaction, and t...
research
12/18/2019

Heteroscedastic Gaussian Process Regression on the Alkenone over Sea Surface Temperatures

To restore the historical sea surface temperatures (SSTs) better, it is ...
research
05/09/2022

Machine Learning Diffusion Monte Carlo Energy Densities

We present two machine learning methodologies which are capable of predi...
research
05/09/2023

A local resampling trick for focused molecular dynamics

We describe a method that focuses sampling effort on a user-defined sele...
research
12/13/2017

Efficient Computation of the Stochastic Behavior of Partial Sum Processes

In this paper the computational aspects of probability calculations for ...

Please sign up or login with your details

Forgot password? Click here to reset