Machine learning for molecular simulation

11/07/2019
by   Frank Noé, et al.
0

Machine learning (ML) is transforming all areas of science. The complex and time-consuming calculations in molecular simulations are particularly suitable for a machine learning revolution and have already been profoundly impacted by the application of existing ML methods. Here we review recent ML methods for molecular simulation, with particular focus on (deep) neural networks for the prediction of quantum-mechanical energies and forces, coarse-grained molecular dynamics, the extraction of free energy surfaces and kinetics and generative network approaches to sample molecular equilibrium structures and compute thermodynamics. To explain these methods and illustrate open methodological problems, we review some important principles of molecular physics and describe how they can be incorporated into machine learning structures. Finally, we identify and describe a list of open challenges for the interface between ML and molecular simulation.

READ FULL TEXT

page 4

page 10

page 13

page 14

page 15

page 16

page 18

research
11/22/2018

Machine learning enables long time scale molecular photodynamics simulations

Photo-induced processes are fundamental in nature, but accurate simulati...
research
12/18/2018

Machine Learning for Molecular Dynamics on Long Timescales

Molecular Dynamics (MD) simulation is widely used to analyze the propert...
research
12/11/2022

SchNetPack 2.0: A neural network toolbox for atomistic machine learning

SchNetPack is a versatile neural networks toolbox that addresses both th...
research
03/07/2022

Prediction of transport property via machine learning molecular movements

Molecular dynamics (MD) simulations are increasingly being combined with...
research
03/02/2017

MoleculeNet: A Benchmark for Molecular Machine Learning

Molecular machine learning has been maturing rapidly over the last few y...
research
11/14/2020

Deep Spatial Learning with Molecular Vibration

Machine learning over-fitting caused by data scarcity greatly limits the...
research
09/17/2023

Fully Convolutional Generative Machine Learning Method for Accelerating Non-Equilibrium Greens Function Simulations

This work describes a novel simulation approach that combines machine le...

Please sign up or login with your details

Forgot password? Click here to reset