Improving the Efficiency of the PC Algorithm by Using Model-Based Conditional Independence Tests
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Learning causal structure is useful in many areas of artificial intelligence, including planning, robotics, and explanation. Constraint-based structure learning algorithms such as PC use conditional independence (CI) tests to infer causal structure. Traditionally, constraint-based algorithms perform CI tests with a preference for smaller-sized conditioning sets, partially because the statistical power of conventional CI tests declines rapidly as the size of the conditioning set increases. However, many modern conditional independence tests are model-based, and these tests use well-regularized models that maintain statistical power even with very large conditioning sets. This suggests an intriguing new strategy for constraint-based algorithms which may result in a reduction of the total number of CI tests performed: Test variable pairs with large conditioning sets first, as a pre-processing step that finds some conditional independencies quickly, before moving on to the more conventional strategy that favors small conditioning sets. We propose such a pre-processing step for the PC algorithm which relies on performing CI tests on a few randomly selected large conditioning sets. We perform an empirical analysis on directed acyclic graphs (DAGs) that correspond to real-world systems and both empirical and theoretical analyses for Erdős-Renyi DAGs. Our results show that Pre-Processing Plus PC (P3PC) performs far fewer CI tests than the original PC algorithm, between 0.5 the PC algorithm alone performs. The efficiency gains are particularly significant for the DAGs corresponding to real-world systems.
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