GANs and Closures: Micro-Macro Consistency in Multiscale Modeling

08/23/2022
by   Ellis R. Crabtree, et al.
0

Sampling the phase space of molecular systems – and, more generally, of complex systems effectively modeled by stochastic differential equations – is a crucial modeling step in many fields, from protein folding to materials discovery. These problems are often multiscale in nature: they can be described in terms of low-dimensional effective free energy surfaces parametrized by a small number of "slow" reaction coordinates; the remaining "fast" degrees of freedom populate an equilibrium measure on the reaction coordinate values. Sampling procedures for such problems are used to estimate effective free energy differences as well as ensemble averages with respect to the conditional equilibrium distributions; these latter averages lead to closures for effective reduced dynamic models. Over the years, enhanced sampling techniques coupled with molecular simulation have been developed. An intriguing analogy arises with the field of Machine Learning (ML), where Generative Adversarial Networks can produce high dimensional samples from low dimensional probability distributions. This sample generation returns plausible high dimensional space realizations of a model state, from information about its low-dimensional representation. In this work, we present an approach that couples physics-based simulations and biasing methods for sampling conditional distributions with ML-based conditional generative adversarial networks for the same task. The "coarse descriptors" on which we condition the fine scale realizations can either be known a priori, or learned through nonlinear dimensionality reduction. We suggest that this may bring out the best features of both approaches: we demonstrate that a framework that couples cGANs with physics-based enhanced sampling techniques can improve multiscale SDE dynamical systems sampling, and even shows promise for systems of increasing complexity.

READ FULL TEXT

page 5

page 7

research
08/27/2020

Multiscale reweighted stochastic embedding (MRSE): Deep learning of collective variables for enhanced sampling

Machine learning methods provide a general framework for automatically f...
research
07/11/2022

Wavelet Conditional Renormalization Group

We develop a multiscale approach to estimate high-dimensional probabilit...
research
12/19/2019

Parareal computation of stochastic differential equations with time-scale separation: a numerical study

The parareal algorithm is known to allow for a significant reduction in ...
research
11/08/2021

Adversarial sampling of unknown and high-dimensional conditional distributions

Many engineering problems require the prediction of realization-to-reali...
research
07/29/2022

Reweighted Manifold Learning of Collective Variables from Enhanced Sampling Simulations

Enhanced sampling methods are indispensable in computational physics and...
research
06/15/2023

Enhanced Sampling with Machine Learning: A Review

Molecular dynamics (MD) enables the study of physical systems with excel...
research
04/28/2021

Discovery of slow variables in a class of multiscale stochastic systems via neural networks

Finding a reduction of complex, high-dimensional dynamics to its essenti...

Please sign up or login with your details

Forgot password? Click here to reset