Exploring data subsets with vtree

10/25/2020

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by   Nick Barrowman, et al.

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Variable trees are a new method for the exploration of discrete multivariate data. They display nested subsets and corresponding frequencies and percentages. Manual calculation of these quantities can be laborious, especially when there are many multi-level factors and missing data. Here we introduce variable trees and their implementation in the vtree R package, draw comparisons with existing methods (contingency tables, mosaic plots, Venn/Euler diagrams, and UpSet), and illustrate their utility using two case studies. Variable trees can be used to (1) reveal patterns in nested subsets, (2) explore missing data, and (3) generate study flow diagrams (e.g., CONSORT diagrams) directly from data frames, to support reproducible research and open science.