Dynamic Risk Prediction Using Survival Tree Ensembles with Application to Cystic Fibrosis

11/14/2020 ∙ by Yifei Sun, et al. ∙ 0

With the availability of massive amounts of data from electronic health records and registry databases, incorporating time-varying patient information to improve risk prediction has attracted great attention. To exploit the growing amount of predictor information over time, we develop a unified framework for landmark prediction using survival tree ensembles, where an updated prediction can be performed when new information becomes available. Compared to the conventional landmark prediction, our framework enjoys great flexibility in that the landmark times can be subject-specific and triggered by an intermediate clinical event. Moreover, the nonparametric approach circumvents the thorny issue in model incompatibility at different landmark times. When both the longitudinal predictors and the outcome event time are subject to right censoring, existing tree-based approaches cannot be directly applied. To tackle the analytical challenges, we consider a risk-set-based ensemble procedure by averaging martingale estimating equations from individual trees. Extensive simulation studies are conducted to evaluate the performance of our methods. The methods are applied to the Cystic Fibrosis Patient Registry (CFFPR) data to perform dynamic prediction of lung disease in cystic fibrosis patients and to identify important prognosis factors.



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