Creating optimal conditions for reproducible data analysis in R with 'fertile'

08/18/2020
by   Audrey M. Bertin, et al.
0

The advancement of scientific knowledge increasingly depends on ensuring that data-driven research is reproducible: that two people with the same data obtain the same results. However, while the necessity of reproducibility is clear, there are significant behavioral and technical challenges that impede its widespread implementation, and no clear consensus on standards of what constitutes reproducibility in published research. We present fertile, an R package that focuses on a series of common mistakes programmers make while conducting data science projects in R, primarily through the RStudio integrated development environment. fertile operates in two modes: proactively (to prevent reproducibility mistakes from happening in the first place), and retroactively (analyzing code that is already written for potential problems). Furthermore, fertile is designed to educate users on why their mistakes are problematic and how to fix them.

READ FULL TEXT

page 1

page 2

page 3

page 4

research
09/21/2021

Toward Reusable Science with Readable Code and Reproducibility

An essential part of research and scientific communication is researcher...
research
09/24/2018

Computational and informatics advances for reproducible data analysis in neuroimaging

The reproducibility of scientific research has become a point of critica...
research
10/05/2022

Be Prospective, Not Retrospective: A Philosophy for Advancing Reproducibility in Modern Biological Research

The ubiquity of computation in modern scientific research inflicts new c...
research
08/15/2023

REFORMS: Reporting Standards for Machine Learning Based Science

Machine learning (ML) methods are proliferating in scientific research. ...
research
03/05/2017

Doing Things Twice: Strategies to Identify Studies for Targeted Validation

The "reproducibility crisis" has been a highly visible source of scienti...
research
09/14/2019

A Step Toward Quantifying Independently Reproducible Machine Learning Research

What makes a paper independently reproducible? Debates on reproducibilit...
research
12/19/2021

Reproducibility Challenges and Their Impacts on Technical Q A Websites: The Practitioners' Perspectives

Software developers often look for solutions to their code-level problem...

Please sign up or login with your details

Forgot password? Click here to reset