Combining machine-learned and empirical force fields with the parareal algorithm: application to the diffusion of atomistic defects

12/20/2022
by   Olga Gorynina, et al.
0

We numerically investigate an adaptive version of the parareal algorithm in the context of molecular dynamics. This adaptive variant has been originally introduced in [F. Legoll, T. Lelievre and U. Sharma, SISC 2022]. We focus here on test cases of physical interest where the dynamics of the system is modelled by the Langevin equation and is simulated using the molecular dynamics software LAMMPS. In this work, the parareal algorithm uses a family of machine-learning spectral neighbor analysis potentials (SNAP) as fine, reference, potentials and embedded-atom method potentials (EAM) as coarse potentials. We consider a self-interstitial atom in a tungsten lattice and compute the average residence time of the system in metastable states. Our numerical results demonstrate significant computational gains using the adaptive parareal algorithm in comparison to a sequential integration of the Langevin dynamics. We also identify a large regime of numerical parameters for which statistical accuracy is reached without being a consequence of trajectorial accuracy.

READ FULL TEXT

page 1

page 2

page 3

page 4

research
12/22/2020

TorchMD: A deep learning framework for molecular simulations

Molecular dynamics simulations provide a mechanistic description of mole...
research
02/05/2022

TorchMD-NET: Equivariant Transformers for Neural Network based Molecular Potentials

The prediction of quantum mechanical properties is historically plagued ...
research
12/14/2022

Machine Learning Coarse-Grained Potentials of Protein Thermodynamics

A generalized understanding of protein dynamics is an unsolved scientifi...
research
07/11/2016

The Vectorization of the Tersoff Multi-Body Potential: An Exercise in Performance Portability

Molecular dynamics simulations, an indispensable research tool in comput...
research
06/09/2020

Simple and efficient algorithms for training machine learning potentials to force data

Abstract Machine learning models, trained on data from ab initio quantum...
research
09/26/2022

Developing Machine-Learned Potentials for Coarse-Grained Molecular Simulations: Challenges and Pitfalls

Coarse graining (CG) enables the investigation of molecular properties f...
research
04/16/2021

Enabling Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms

We push the boundaries of electronic structure-based ab-initio molecular...

Please sign up or login with your details

Forgot password? Click here to reset