Attri-VAE: attribute-based, disentangled and interpretable representations of medical images with variational autoencoders
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Deep learning (DL) methods where interpretability is intrinsically considered as part of the model are required to better understand the relationship of clinical and imaging-based attributes with DL outcomes, thus facilitating their use in reasoning medical decisions. Latent space representations built with variational autoencoders (VAE) do not ensure individual control of data attributes. Attribute-based methods enforcing attribute disentanglement have been proposed in the literature for classical computer vision tasks in benchmark data. In this paper, we propose a VAE approach, the Attri-VAE, that includes an attribute regularization term to associate clinical and medical imaging attributes with different regularized dimensions in the generated latent space, enabling a better disentangled interpretation of the attributes. Furthermore, the generated attention maps explained the attribute encoding in the regularized latent space dimensions. The Attri-VAE approach analyzed healthy and myocardial infarction patients with clinical, cardiac morphology, and radiomics attributes. The proposed model provided an excellent trade-off between reconstruction fidelity, disentanglement, and interpretability, outperforming state-of-the-art VAE approaches according to several quantitative metrics. The resulting latent space allowed the generation of realistic synthetic data in the trajectory between two distinct input samples or along a specific attribute dimension to better interpret changes between different cardiac conditions.
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