Application of Markov Structure of Genomes to Outlier Identification and Read Classification

12/24/2021

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by   Alan F. Karr, et al.

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37

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In this paper we apply the structure of genomes as second-order Markov processes specified by the distributions of successive triplets of bases to two bioinformatics problems: identification of outliers in genome databases and read classification in metagenomics, using real coronavirus and adenovirus data.