An Extended Simplified Laplace strategy for Approximate Bayesian inference of Latent Gaussian Models using R-INLA

03/27/2022
by   Cristian Chiuchiolo, et al.
0

Various computational challenges arise when applying Bayesian inference approaches to complex hierarchical models. Sampling-based inference methods, such as Markov Chain Monte Carlo strategies, are renowned for providing accurate results but with high computational costs and slow or questionable convergence. On the contrary, approximate methods like the Integrated Nested Laplace Approximation (INLA) construct a deterministic approximation to the univariate posteriors through nested Laplace Approximations. This method enables fast inference performance in Latent Gaussian Models, which encode a large class of hierarchical models. R-INLA software mainly consists of three strategies to compute all the required posterior approximations depending on the accuracy requirements. The Simplified Laplace approximation (SLA) is the most attractive because of its speed performance since it is based on a Taylor expansion up to order three of a full Laplace Approximation. Here we enhance the methodology by simplifying the computations necessary for the skewness and modal configuration. Then we propose an expansion up to order four and use the Extended Skew Normal distribution as a new parametric fit. The resulting approximations to the marginal posterior densities are more accurate than those calculated with the SLA, with essentially no additional cost.

READ FULL TEXT

page 1

page 2

page 3

page 4

research
11/02/2019

Bayesian model averaging with the integrated nested Laplace approximation

The integrated nested Laplace approximation (INLA) for Bayesian inferenc...
research
12/06/2021

Joint Posterior Inference for Latent Gaussian Models with R-INLA

Efficient Bayesian inference remains a computational challenge in hierar...
research
07/02/2019

Integrated Nested Laplace Approximations (INLA)

This is a short description and basic introduction to the Integrated nes...
research
11/22/2019

A Novel Method of Marginalisation using Low Discrepancy Sequences for Integrated Nested Laplace Approximations

Recently, it has been shown that approximations to marginal posterior di...
research
04/15/2019

Approximate Bayesian Inference via Sparse grid Quadrature Evaluation for Hierarchical Models

We combine conditioning techniques with sparse grid quadrature rules to ...
research
03/16/2020

Laplace approximation for fast Bayesian inference in generalized additive models based on penalized regression splines

Generalized additive models (GAMs) are a well-established statistical to...
research
11/01/2012

Laplace approximation for logistic Gaussian process density estimation and regression

Logistic Gaussian process (LGP) priors provide a flexible alternative fo...

Please sign up or login with your details

Forgot password? Click here to reset