A Simple Approach for Local and Global Variable Importance in Nonlinear Regression Models
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The ability to interpret machine learning models has become increasingly important as their usage in data science continues to rise. Most current interpretability methods are optimized to work on either (i) a global scale, where the goal is to rank features based on their contributions to overall variation in an observed population, or (ii) the local level, which aims to detail on how important a feature is to a particular individual in the dataset. In this work, we present the “GlObal And Local Score” (GOALS) operator: a simple post hoc approach to simultaneously assess local and global feature variable importance in nonlinear models. Motivated by problems in statistical genetics, we demonstrate our approach using Gaussian process regression where understanding how genetic markers affect trait architecture both among individuals and across populations is of high interest. With detailed simulations and real data analyses, we illustrate the flexible and efficient utility of GOALS over state-of-the-art variable importance strategies.
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