A Point Mass Proposal Method for Bayesian State-Space Model Fitting

03/25/2022
by   Mary Llewellyn, et al.
0

State-space models (SSMs) are often used to model time series data where the observations depend on an unobserved latent process. However, inference on the process parameters of an SSM can be challenging, especially when the likelihood of the data given the parameters is not available in closed form. We focus on the problem of model fitting within a Bayesian framework, to which a variety of approaches have been applied, including MCMC using Bayesian data augmentation, sequential Monte Carlo (SMC) approximation, and particle MCMC algorithms, which combine SMC approximations and MCMC steps. However, these different methods can be inefficient because of sample impoverishment in the sequential Monte Carlo approximations and/or poor mixing in the MCMC steps. In this article, we propose an approach that borrows ideas from discrete hidden Markov models (HMMs) to provide an efficient MCMC with data augmentation approach, imputing the latent states within the algorithm. Our approach deterministically approximates the SSM by a discrete HMM, which is subsequently used as an MCMC proposal distribution for the latent states. We demonstrate that the algorithm provides an efficient alternative approach via two different case studies.

READ FULL TEXT

page 1

page 2

page 3

page 4

research
04/04/2022

MCMC for GLMMs

Generalized linear mixed models (GLMMs) are often used for analyzing cor...
research
05/13/2019

Replica Conditional Sequential Monte Carlo

We propose a Markov chain Monte Carlo (MCMC) scheme to perform state inf...
research
04/21/2020

Stochastic Epidemic Models inference and diagnosis with Poisson Random Measure Data Augmentation

We present a new Bayesian inference method for compartmental models that...
research
09/07/2018

Scalable Monte Carlo inference for state-space models

We present an original simulation-based method to estimate likelihood ra...
research
07/13/2023

Sequential Monte Carlo Learning for Time Series Structure Discovery

This paper presents a new approach to automatically discovering accurate...
research
10/14/2018

Efficient Reconstructions of Common Era Climate via Integrated Nested Laplace Approximations

A Paleoclimate Reconstruction on the Common Era (1-2000AD) was performed...
research
05/15/2022

Inference of Stochastic Disease Transmission Models Using Particle-MCMC and a Gradient Based Proposal

State-space models have been widely used to model the dynamics of commun...

Please sign up or login with your details

Forgot password? Click here to reset